In this post I show how to use Trilogy, a new testing framework for SQL databases, with the open source Greenplum Database. The goal is to help you test drive your data science SQL code. The accompanying code is available on Github.
As a data scientist at Pivotal I write a lot of SQL and I write a lot of tests. Doing both at the same time has always been a bit difficult. Some SQL databases have testing frameworks like PGTap or Oracle SQL Developer, but these are rarely easy to set up and work with on a real system.
In the past I have leveraged other programming languages like Python, R or even Bash to run simple SQL test suites and make them part of our CI pipeline. I would spend some time at the start of each project getting this setup working but it would always be somewhat hard-coded for the project at hand, and be difficult for new team members to understand without a lot of effort.
Trilogy is written in Java, but can be used simply from the command line, and can connect to any database with a JDBC driver (which is pretty much all of them). A key feature of Trilogy is that tests are written in SQL wrapped in a simple Markdown template, so that there is no cognitive dissonance between the code you are testing in SQL and the test itself.
If you use Oracle, PostgreSQL or any other database you can get started with Trilogy by following the README.
As a data scientist test driving my code,
I often use the open source
Greenplum Database or its commercial counterpart
Greenplum is a Massively Parallel Processing (MPP) database, and started as a
fork from PostgreSQL around version 8.2. This means that many of the normal
PostgreSQL tools like
psql or JDBC drivers from PostgreSQL can be used easily
PostgreSQL and Greenplum have developed in different directions in the intervening years however, so sometimes there are recent features from PostgreSQL that are not available in Greenplum (and vice versa of course).
In particular for the Trilogy testing framework, the easiest way to write tests is to run an anonymous code block and raise an exception if the test fails. In this post I am going to describe how you can still use Trilogy with Greenplum without needing these anonymous code blocks.
tagwith a suitable name:
docker build -t [tag] .
docker run -i -p 5432:5432 [tag]
psql. The password for
psql -U gpadmin -h localhost -p 5432
If everything has worked you should see something like:
PostgreSQL 8.2.15 (Greenplum Database 184.108.40.206 build 1) on x86_64-unknown-linux-gnu, compiled by GCC gcc (GCC) 4.4.2 compiled on Jan 21 2016 15:51:02 (1 row)
CREATE database testing;
Create a file called
simple.stt as a simple first test:
# TEST CASE Our first test ## TEST This is the test ``` SELECT 1; ```
This file is available in the accompanying repo in the
Run this test using Trilogy:
java -jar trilogy.jar --db_url=jdbc:postgresql://localhost:5432/testing --db_user=gpadmin --db_password=pivotal ./simple.stt
You can also specify the database parameters in environmental variables:
export DB_URL='jdbc:postgresql://localhost:5432/testing' export DB_USER=gpadmin export DB_PASSWORD=pivotal java -jar trilogy.jar ./simple.stt
The PostgreSQL JDBC driver needs to be available to connect to Greenplum.
On macOS you can add the driver JAR to
~/Library/Java/Extensions to make it available
to all Java programs.
If you need to provide the PostgreSQL JDBC driver using a Classpath then the entry point for the Java application changes:
java -classpath /PATH/TO/JDBC/DRIVER/postgresql-9.4.1212.jar:/PATH/TO/TRILOGY/trilogy.jar org.springframework.boot.loader.JarLauncher ./simple.stt
You should see the Trilogy logo and a successful result:
SUCCEEDED Total: 1, Passed: 1, Failed: 0
Trilogy test cases assume that anything that doesn’t raise an exception is a passing test.
Our next goal is to get a test to fail. To do this we need to use the
RAISE statement that
is part of PL/PGSQL.
From PostgreSQL 9.0 onwards, it is possible to have an anonymous block of PL/PGSQL code, which makes writing these tests very efficient:
DO $$ BEGIN SELECT CASE WHEN 2*3=6 THEN NULL ELSE RAISE EXCEPTION 'Failed to multiply!'; END $$;
Unfortunately Greenplum does not include the
DO command so we need to allow some way to
RAISE an exception from PL/PGSQL, preferably without creating a new function for each test.
One way to do this is to create two void functions,
fail(), and call these
as needed inside our tests. To create these functions run the following inside
CREATE OR REPLACE FUNCTION fail(msg text) RETURNS VOID AS $$ BEGIN RAISE EXCEPTION 'FAILED: %', msg; END; $$ language plpgsql; CREATE OR REPLACE FUNCTION pass() RETURNS VOID AS $$ BEGIN NULL; END; $$ language plpgsql;
You can see how this works by trying the following statement in
SELECT fail('This test failed!');
You should see
ERROR: FAILED: This test failed! as the response.
We’re now ready to create a failing test in
# TEST CASE A failing test ## TEST This test should fail ``` SELECT CASE WHEN 2*3=7 THEN pass() ELSE fail('Failed to multiply') END; ```
This file is also available in the accompanying repo in the
You can run this test using Trilogy as before:
java -jar trilogy.jar ./tests/failing.stt
You should see the test fail with our test description included in the output.
[FAIL] A failing test - This test should fail: StatementCallback; uncategorized SQLException for SQL [SELECT CASE WHEN 2*3=7 THEN pass() ELSE fail('Failed to multiply') END]; SQL state [P0001]; error code ; ERROR: FAILED: Failed to multiply; nested exception is org.postgresql.util.PSQLException: ERROR: FAILED: Failed to multiply FAILED Total: 1, Passed: 0, Failed: 1
For real world use cases you need to go beyond testing a single SQL statement inside a specific test file. Trilogy allows you to test a whole project, with overall database schema and test setup and teardown scripts.
The instructions in the Trilogy README explain how a project should be laid out, and the repo accompanying this post has an example of one for a Greenplum database. With this set up your test script can specify when to execute setup and teardown scripts and you can test user defined functions that you have added to your database.
Consider the following function that we want to add to a customer transactions database to check the consistency of the customer balance:
CREATE OR REPLACE FUNCTION VALIDATE_BALANCE( V_CLIENT_ID INT) RETURNS BOOL AS $$ DECLARE IS_VALID BOOLEAN; BEGIN SELECT CASE C.BALANCE - COALESCE(SUM(T.VALUE), '0') WHEN '0' THEN TRUE ELSE FALSE END INTO IS_VALID FROM CLIENTS C LEFT JOIN TRANSACTIONS T ON T.ID_CLIENT=C.ID WHERE C.ID=V_CLIENT_ID GROUP BY C.ID, C.BALANCE; RETURN IS_VALID; END; $$ LANGUAGE plpgsql;
To test this function in an isolated testing database we need to
clientstable and a
transactionstable. This happens in
We can specify when to run each setup and teardown script inside our test
# TEST CASE Generic test case example ## BEFORE ALL - Setup client ## BEFORE EACH TEST - Set client balance ## AFTER EACH TEST - Remove transactions ## AFTER ALL - Remove clients ## TEST This test should fail ``` SELECT CASE WHEN (1 <> 2) THEN fail('This should not have happened.') END FROM clients where ID=66778899 ; ``` ## TEST This test should pass ``` SELECT CASE WHEN VALIDATE_BALANCE(66778899) THEN pass() ELSE fail('Balance not valid.') END; ``` ## TEST And this test should pass ``` SELECT 1; ```
## BEFORE EACH TEST - Set client balance
state that we should run the client balance setup script before each test invocation.
The name of this script is determined from the second line and could be
setclientbalance.sql or similar.
Trilogy can run a project like
gpdb_generic in the accompanying repo using
java -jar trilogy.jar --project tests/gpdb_generic
As your data science SQL code grows, this project structure allows you to flexibly add schemas and fixture scripts as needed.
From what I’ve seen, Trilogy is an interesting new testing framework for SQL databases that solves some of the issues with other frameworks. Having shown how it can work with Greenplum databases I’m looking forward to making use of it in future projects!